PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s890091g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 349aa    MW: 39567.5 Da    PI: 9.1306
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s890091g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.57.4e-2872145374
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                        g+kdrhsk+ T +g+RdRRvRls+++a+++++Lqd+LG+ ++sk ++WLl++++++i +l+ ++ +++ +    
  PDK_30s890091g001  72 GGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYELQDKLGLNQPSKVVDWLLNASQHEINKLPPLQMPPEYFIqfP 145
                        78*************************************************************88888655321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.9E-2773179IPR005333Transcription factor, TCP
PROSITE profilePS5136928.65173131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRKSLPYAGN SQLQLSECLQ SDESITMIRN SREEELLTKQ GGGNNDDRFP MSSRLWSELR  60
NPRIVRVSRT FGGKDRHSKV RTIRGLRDRR VRLSVPTAIQ LYELQDKLGL NQPSKVVDWL  120
LNASQHEINK LPPLQMPPEY FIQFPQSMAI SHKLAPPEAP SFLPIRDSTE FIYYDRARHL  180
ASSSTVANGD MLDNNTGENV MMLQKSAFWS SDVLMKNREK EAMKEPSTEK GSMIKGNDVG  240
SDGLQNNAIY PSYHHWNPPN AHLSHLVSHL SREEGLHNYQ PGSMFATYLN APTDFAKQYN  300
HLDMANSASK FLPSNSLRTS LQSTGDPSLK VLHPNSGFKH HYPQDHQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1778132155Putative transcription factor PCF6
5zkt_B7e-1778132155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791353.20.0transcription factor TCP13-like
TrEMBLA0A2H3XZZ90.0A0A2H3XZZ9_PHODC; transcription factor TCP13-like
STRINGXP_008791353.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5