PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s864051g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 325aa    MW: 35932.9 Da    PI: 4.4705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s864051g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-071481841354
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        R+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PDK_30s864051g004 148 RKRLNDRLSMLRSIVPKiS------KMDRTSILSDTIDYMKEL 184
                        89***************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-7130189No hitNo description
PROSITE profilePS5088811.331135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-6142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11148196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11148208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5148184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00127234297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELDELGFLE ELLALRGETW DTLPNGMSEF FSSEGSLDCF QESQGLVPPS FSAFEGLAAA  60
PAEPSFDCLS EVYCLLGAGF AAAAPEIHSS SVQSALEDGK TGRPVHGDGQ TVCKVEMGPV  120
VLGMGGRMDR KKRRAEGLQS KNLMAESRKR LNDRLSMLRS IVPKISKMDR TSILSDTIDY  180
MKELLERIKR LQEEIELGSE QPNLLGIFKE QLNPNDILVR NSPKFDVDRR DSDTRIEICC  240
TSKTGLLLST VNTLEALGLD IQQCVISCFN DFGMQASCSE DMEQRAAISS EEIKQALFRN  300
AGYGGSYLDA YLYPSLMIVS MQYRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811793.10.0transcription factor bHLH93-like
SwissprotQ9LSL12e-77BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3ZCP70.0A0A2H3ZCP7_PHODC; transcription factor bHLH93-like
STRINGXP_008811793.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-77beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]