PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s827481g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family CPP
Protein Properties Length: 865aa    MW: 94590 Da    PI: 6.2379
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s827481g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR33.58.6e-115005241640
                TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                         YCeCfaag++Cse C+C++C+Nk 
  PDK_30s827481g001 500 SYCECFAAGVYCSEPCSCQGCFNKP 524
                        7**********************96 PP

2TCR30.76.3e-10571592122
                TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                        ++k+gCnCkks+ClkkYCeC++
  PDK_30s827481g001 571 RHKRGCNCKKSNCLKKYCECYQ 592
                        589******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163423.98485615IPR005172CRC domain
SMARTSM011143.3E-6490526IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-7500523IPR005172CRC domain
SMARTSM011143.3E-4571604IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-6573592IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MDTPERSKIA GTPLSKFEIT YPYQLVEDKD SPVFNFINSL SPIQPVKSLD SVHSAQSYLP  60
SISSIFSSPH ANLQRESKLL IRNSFPDFSK YESSSDNVDE SNLSTGALNA VRLSRCTVIA  120
RENCSIICSL NEATIDPPDE CSTLPSNLSQ PEQYYPGSPN HNTAPCFGIK MDVKLDIGHA  180
PLELVRFVQN GMDKRKSFYA SETEFLGNHP PEHNRDEVVG CDWENLISDN GDSLSIFDSN  240
NESEACKGPI EKLGDSSKLA EDLERSQKTQ PEESFGPCVQ TASQDPPVNC SEENGKEDET  300
DHTPQILSDT CQTQVALSDQ IEKTANGNGD HIQSGHKVDF QQQRGMRRRC LVFDTAGFSK  360
KNLQDNSNFH SSTSLLSNEK MASDDKCSRP GTSHSPCVLP GIGLHLNTLA TTSKDRLVTQ  420
ETLASGKQLK SMPCSVGPFA PTTSGQKSKS LAVEKDMSPT GNEVQNLQIV HDDASQVPAL  480
GNGEELNQGS PKKKRILLGS YCECFAAGVY CSEPCSCQGC FNKPIHEEMV LATRKQIESR  540
NPLAFAPKVI RTSETGQEIG EDANKTPASA RHKRGCNCKK SNCLKKYCEC YQVLPLGSLN  600
MLSLLVVLDA LSAADVRDAR MPLEGKRGSD NSFVRTCHFR LCLQHSENNG GGFTGILSQL  660
LTYMGLHGVY NEIHESAKWN KGEAQGIVPI GAEEMEQGRE ETNPCEREKD KPDDDGQQHA  720
NVQIEDNHSS ENVLSVTPLQ TRRPCVKLPL FSSAKPPRSS TLSVGFSPWL FTSQPIRKSE  780
IPLPQHKLEK HVSTVLEDDT PDILRCDASP SNGVKTASPN RKRVSPPHNG IGLSPSRKGG  840
KKLILKSIPS FPSLAGCEVA RLGGM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789994.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2H3XX470.0A0A2H3XX47_PHODC; protein tesmin/TSO1-like CXC 2
STRINGXP_008789994.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-64Tesmin/TSO1-like CXC domain-containing protein