PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s825821g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 165aa    MW: 19133.4 Da    PI: 10.3312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s825821g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-063052123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  PDK_30s825821g005 30 FVCEICNKGFQRDQNLQLHRRGH 52
                       89*******************88 PP

2zf-C2H214.30.00012106128123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  PDK_30s825821g005 106 WKCDKCSKKYAVQSDWKAHTKIC 128
                        58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-72952No hitNo description
Gene3DG3DSA:3.30.160.603.8E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9493052IPR007087Zinc finger, C2H2
PfamPF121711.9E-53052IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0173052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035525071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-494127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-7101126No hitNo description
SMARTSM00355140106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKKRNLPGTP DPTAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RTSTEVRKRV YICPETTCVH HNPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  120
WKAHTKICGT KEYKCDCGTI FSSELSIIRR TTLMMRCMII VMSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21102148349Zinc finger protein JACKDAW
5b3h_F1e-21102148349Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569262e-45EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931612.11e-106zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9LVQ73e-96IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ62e-96IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3YM781e-102A0A2H3YM78_PHODC; protein indeterminate-domain 2-like
STRINGXP_008800868.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-88C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]