PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s825821g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 494aa    MW: 53550.4 Da    PI: 8.7683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s825821g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055274123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  PDK_30s825821g004 52 FVCEICNKGFQRDQNLQLHRRGH 74
                       89*******************88 PP

2zf-C2H212.40.00046128150123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  PDK_30s825821g004 128 WKCDKCSKKYAVQSDWKAHTKIC 150
                        58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.86E-75174No hitNo description
PfamPF121717.8E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035525093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-4116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.86E-7123148No hitNo description
SMARTSM00355140128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSNITGDGGS FSSENHTGEE EVKKKRNLPG TPDPTAEVIA LSPTTLMATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWKL RQRTSTEVRK RVYICPETTC VHHNPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKKYAVQ SDWKAHTKIC GTKEYKCDCG TIFSRFTSYT NRFNVERDSF  180
ITHRAFCDAL VEENNKTSSG LMPTMGSNLQ AHRVPELMMP IGTPSTADSP VGLSDFNNHD  240
IKNPLKALPY DLMPTPLRSH TMAGSMLSTT TAATLFSSRT FPSGYHVLSD STKMGQLAIG  300
SADMSATALL QKAAQLGATA TCGATAMTSS KTHRSFISEM AGPDQNSTIR PYGLYDGVQT  360
HGMGVDGGGF VNQFFDTTMG ESSGLSDIGM FPLTAGMLNN SGGGGGGSQG GSGGSRLSYG  420
GGGSGDVMTV DFLGVGRART VPAMGLHEKQ QQQQQGMQFG GVGQQRLQEL HPFQRQEQQL  480
SYGQAAMEKA LWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-30124199367Zinc finger protein JACKDAW
5b3h_F4e-30124199367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569262e-45EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800868.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-110IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3YM780.0A0A2H3YM78_PHODC; protein indeterminate-domain 2-like
STRINGXP_008800868.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-98C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]