PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s813012g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 481aa    MW: 51017.7 Da    PI: 9.5598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s813012g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001383103323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C++C+k F r  nL+ H r H
  PDK_30s813012g001  83 CEICNKGFQRDQNLQLHRRGH 103
                        *******************88 PP

2zf-C2H211.20.0012157179123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +   s+ k H + +
  PDK_30s813012g001 157 WKCDKCPKKYAVLSDWKAHVKIC 179
                        58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.41E-780103No hitNo description
SMARTSM003550.1181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82481103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355240122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.41E-7152177No hitNo description
SMARTSM00355120157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSNITGDGGS FSSENHTGEE VQQSQQQLPL HGTITATTNG NGSQPAPSPL VKKKRNHPGT  60
PDPTAEVIAL SPATLLAKNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSTEVRKK  120
VYVCPETTCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCPKKYAVLS DWKAHVKICG  180
TREYKCDCGT IFSRKDSFIT HRAFCDALAE ENTKAKNGVM PTMSPNLQAQ PPELMMPIGT  240
SIGSLPVGVS DFDNHDIKNP LKGFAYDLMP TSLRSHTMAG TMLSSPTAAT LFSSGTFPSG  300
YNGLSDDAKT GRPAIASAHM SATALLQKAA QMGVNGGAFA NQFFDIGMGG GSAVSDAAGV  360
LPSNAGVFVG GGGHSHGLLK ALEHASGGGG SLMQGGSGRS GVRYGGGGTG DVTTLDFLGV  420
SGARSVAAMG LHEQQQQHQG MEFGGVGRKR LLGLHPFQQQ QQLSNGQGAS MEKVVWDVLS  480
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32153214364Zinc finger protein JACKDAW
5b3h_F1e-32153214364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLRQRTSTEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026656132.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3Q0HRN80.0A0A3Q0HRN8_PHODC; protein indeterminate-domain 2-like
STRINGXP_008813374.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]