PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s811331g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 267aa    MW: 29855.3 Da    PI: 6.5142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s811331g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-057391321
                       ETTTTEEESSHHHHHHHHH CS
            zf-C2H2  3 CpdCgksFsrksnLkrHir 21
                       C++Cgk F+++ +L+ H+r
  PDK_30s811331g001 73 CKKCGKGFPSWKSLVGHMR 91
                       ******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-8931No hitNo description
SMARTSM003550.3931IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-8932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801031IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-86693No hitNo description
PROSITE profilePS501579.9517198IPR007087Zinc finger, C2H2
SMARTSM003550.0267193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-47393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-67395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERDQELKHC CKVCGKSFPC GRSLGGHMRS HLAMNSSTEV EVGAGYGLRE NPKKTWQLSD  60
SRGNGSPRHH KLCKKCGKGF PSWKSLVGHM RCHPEKSDRN LEEGEGQDKE FEEQEASSSL  120
VLEFDKEQED VALSLMMLSR DIGFWSGISS IAESSDKNLV VLEDVASEGD EIGKEKKTSE  180
FIASRNGDKR DGPKKVESDV SDDDDIGVVK DDESKKPKAY ASNTDEFKYL YEASRKGSLK  240
KKDLNCGLAE LGRKTRFDQW HSGVRQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661257.10.0uncharacterized protein LOC113462865
TrEMBLA0A3Q0I7670.0A0A3Q0I767_PHODC; uncharacterized protein LOC113462865
STRINGXP_008805104.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-31C2H2-like zinc finger protein