PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s809591g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 299aa    MW: 33120.5 Da    PI: 6.9353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s809591g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05118137120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C+ C+k+F+r  n++ H+
  PDK_30s809591g002 118 FSCTVCNKTFNRFNNMQMHM 137
                        89*****************9 PP

2zf-C2H211.70.00079206228123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C  Cgk F  + + ++H +++
  PDK_30s809591g002 206 FGCRRCGKAFAVRGDWRTHEKNC 228
                        56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-597139No hitNo description
PROSITE profilePS5015710.201118145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5118137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.15118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SMARTSM00355220169201IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-5192226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-6192226No hitNo description
SMARTSM00355160206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSSQGEEED HSILLLTLWP PGQQKNPSSC SSSASSSSST SWFQHHSKKQ HLISHPLNQQ  60
PDDEESNVTI ALSIGPPSAS GSASRRTNAT NTTAGPHSTP TQYWIPSAAE ILVSTTQFSC  120
TVCNKTFNRF NNMQMHMWGH GSQYRKGSES LRGATKTMAS SSLMRLPCYC CAEGCKNNIE  180
HPRSRPLKDF RTLQTHYKRK HGARPFGCRR CGKAFAVRGD WRTHEKNCGK LWFCICGSDF  240
KHKRSLKDHV RSFGGGHAPH IVESTSVDEE EEEEEEEEGE EEGEDVGGEG NGENGDMLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791254.10.0zinc finger protein WIP6-like, partial
SwissprotQ9FX681e-109ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2H3XZT00.0A0A2H3XZT0_PHODC; zinc finger protein WIP6-like
STRINGXP_008791254.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-102C2H2-like zinc finger protein