PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s807041g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 727aa    MW: 77755.2 Da    PI: 6.4344
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s807041g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11299355155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  PDK_30s807041g004 299 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 355
                        57*******************4444.2455535555.779999**************98 PP

2AP246.68.4e-15398449155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s807041g004 398 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 449
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-19299365No hitNo description
PfamPF008475.4E-9299355IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-15299365IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-12300364IPR001471AP2/ERF domain
PROSITE profilePS5103217.385300363IPR001471AP2/ERF domain
SMARTSM003806.4E-23300369IPR001471AP2/ERF domain
PRINTSPR003674.0E-6301312IPR001471AP2/ERF domain
PfamPF008471.0E-9398449IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17398459IPR016177DNA-binding domain
CDDcd000189.37E-25398459No hitNo description
Gene3DG3DSA:3.30.730.105.4E-18399458IPR001471AP2/ERF domain
PROSITE profilePS5103219.045399457IPR001471AP2/ERF domain
SMARTSM003801.5E-33399463IPR001471AP2/ERF domain
PRINTSPR003674.0E-6439459IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MASMNNWLGF SLSPQELPPS QPHQSPTLIS GDEVSADCYG LSTDPASAPP LGIPTLRSDG  60
SFGILEALNR PNSHPQDWSM KSLDFKGSSS ELSILVGSSS NQNNMDHDEP KLEDFLGGNS  120
FSDHDQKLPP GCSSIPGTYD NSGDYMFSNC SLQLPAAASM TSNGGNNGGL MNSTGTGSSS  180
NSIGLSMIKT WLRNQPAPLQ QPEGNSNMDS AGTSNCGRGT LEGGVGGPMA SSQSLSLSMS  240
TGSQSSSALP LMAAAASGGG ESSSSENKQK GSGSSLDAQS GSIEAVPRKS IDTFGQRTSI  300
YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTT  360
NFPISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  420
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPIGGAAKR  480
LKDVSEHAEA SVDGRRTDDD NLTSQLTDGI SSSYASHAHH HGWPPFAFPQ AQPLAMHYPY  540
SQQRGWCKQE QDSVMATAHT LQDLQQLHLG NNTHNFFQPS VIHNLISMDS SSMEHSTGSN  600
SVIYNGSMGG SSGGYQGVVG GSGRYALPVS TMVVDQGQGN QGSSSFGENE GKAIGYENML  660
GSTDPYGGRS VYYLSQQSSG GVVKDNGYDQ SGGCNTWMQP SVQAVAPRAN NVAVCHGAPL  720
FTVWNDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791735.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2H3Y0T50.0A0A2H3Y0T5_PHODC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008791735.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-122AP2 family protein