PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s799341g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 390aa    MW: 43648.8 Da    PI: 6.0883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s799341g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-066284123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C+++F ++  L++H+r+H
  PDK_30s799341g002 62 YFCQMCPRVFQTQQKLQVHQRSH 84
                       78********************9 PP

2zf-C2H211.80.00073137159123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +C k++    +Lk H + +
  PDK_30s799341g002 137 WRCDKCRKMYAVEADLKAHRKIC 159
                        58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.55E-56086No hitNo description
SMARTSM003550.00326284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.996285IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035551102132IPR015880Zinc finger, C2H2-like
SMARTSM0035588137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSRDDSTIVP PAQVPDEDVN RSHDSPENQQ RPRRRRNKPG NPDPRAKVIA LSPRELLAKA  60
DYFCQMCPRV FQTQQKLQVH QRSHSIPWIF QPSDRNDLKP VYVCPEPTCV HHNPLRALSD  120
ITGIKKHYYR KHCEPKWRCD KCRKMYAVEA DLKAHRKICS TYRREECDAH RQLQQCGTTR  180
EEMRSPNDSL NLLLWLSEEN PSSNHPGMVS GTDLISTPPV QHEEVATGAA ASDPSSSSFF  240
GGLLGSMNGQ QQNEFQSFAQ ETPYSSSSPS YFHQVINLTE QSQGNELQCF GPGLQFFGQD  300
PVVSSSFPFE IPNMETDYVA AISVGLSAPT EGQGRRMDPP IYSSGMVQPD QGGLMTVPFS  360
GPEVQPAALP PTPSPSPSQL DELERLVMED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799261.10.0protein indeterminate-domain 11-like
TrEMBLA0A2H3YIT30.0A0A2H3YIT3_PHODC; protein indeterminate-domain 11-like
STRINGXP_008799261.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.25e-46C2H2-like zinc finger protein