PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s792411g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 359aa    MW: 39705.7 Da    PI: 6.1069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s792411g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.1e-052502891155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  PDK_30s792411g001 250 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 289
                        57788999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.963239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-5244293No hitNo description
SuperFamilySSF474596.67E-11249300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9253296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEPSNLGHHH HQEELHASSF HDLGSHNEWS QGPMLYKKQK DVFVVCDVFI SDADGVLSSQ  60
RDYRLSHEIP PPPLDSQMVQ DLGFHWAGSA ESFMNQSAHQ LNLAKIKEEL PDSFPKLSGV  120
IREPSIEDYQ LEEKLFRTLA SDCQINSCQP RSTTDLFDAP SLADHGGGRG SLSLVFPTAN  180
ISNPCPPMQT VPISQGMDLE ALDLLASARF DRSFCQPLFS GMGLLREDTP FALGHLHEIA  240
QGPSHGHRKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQD QVETLSVPYL  300
RSSNNKKART TQGVSNEKRD EPKLDLRSRG LCLVPLSCTS YVTSDDGGIW SPPNYRGSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784940.10.0transcription factor bHLH110-like
TrEMBLA0A2H3XJZ20.0A0A2H3XJZ2_PHODC; transcription factor bHLH110-like
STRINGXP_008784940.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-40bHLH family protein