PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s783041g012
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 321aa    MW: 35377.4 Da    PI: 4.6947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s783041g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11156198754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PDK_30s783041g012 156 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 198
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.07E-5140203No hitNo description
PROSITE profilePS5088815.085149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16153219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9156198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELDEHGFLE ELLALRRETW DPLPTGMSEF FSSEGSLDCF QESQGLVAPS FSAFEGLAPP  60
AEPNFDCLSE VYCPFGAGLI AAAPEIQSPT SVRPALEDAK VGLVHGDRHG VAGDGQALCK  120
VELGQSAEAP AVCGMGGCME RRKKKRAEGL PSKNLMAERR RRKRLNDRLS MLRSVVPKIS  180
KMDRTSILGD TIDYMKELLE RIKQLQDEIE VGSEQPNLLG IFKELNPNEI LVRNSPKFDV  240
ERRDSDTRIE ICCTAKPGLL LSTVNTLEAL GLEIQQCVVS CFNDFGMQAS CSEDVEQRVV  300
MSSDEIKQAL FRNAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RRKKKR
2143163KKRAEGLPSKNLMAERRRRKR
3157164ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806159.10.0transcription factor bHLH93-like
SwissprotQ9LSL14e-85BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3YZF60.0A0A2H3YZF6_PHODC; transcription factor bHLH93-like
STRINGXP_008806159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-87beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]