PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s775431g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 197aa    MW: 21470 Da    PI: 4.6582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s775431g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246587123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C + F++   L  H+++H
  PDK_30s775431g003 65 YACSFCRREFRSAQALGGHMNVH 87
                       89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-66291No hitNo description
PfamPF139121.3E-56588IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1776592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAAELSLPSM NQLQKLAQQQ QQQLNPSIWN WPGRRPAEDD DSWEVRAFAE DTSSAMGTTW  60
PPRSYACSFC RREFRSAQAL GGHMNVHRRD RARLRQSPQG SDDPAPTETP SPPIIFPPPI  120
PEFVANGGYC LLYPIPNTGT VFAPTGDSPS TLLSIAPYPG GGLVSPSPPT LDSWVGKDGG  180
KDGAVVEELD LELRLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-136087229superman protein
2l1o_A5e-136087229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709269.12e-94zinc finger protein KNUCKLES-like
TrEMBLA0A2H3YBV84e-75A0A2H3YBV8_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008796324.17e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-30C2H2 family protein