PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s760891g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 487aa    MW: 53196.8 Da    PI: 9.0792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s760891g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056385123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  PDK_30s760891g001 63 FVCEICNKGFQRDQNLQLHRRGH 85
                       89*******************88 PP

2zf-C2H211.30.0011139161123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  PDK_30s760891g001 139 WKCDKCSKKYAVQSDWKAHSKIC 161
                        58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-76285No hitNo description
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
PfamPF121717.7E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355110104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEENMSNLTS ASREASVTSN QQSSFASPHP APVKKKRNLP GNPDPDAEVM ALSPKTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSSKEVK KKVYICPEVT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEESARAMTA NPLANHPTLL FSQPTSSHDP SPLPHTALQA QFPQLMRATE  240
ANTNIIGTHG LQELSPKREQ HFSMRTDIPP WLACQGPTSL NPLDLHSSIY STRLEQQYSR  300
ENPAGPPPPL PPPFQGPSGA ASSHMSATAL LQKAAQMGAT MSRPPRHDQM ATHTANASVA  360
NTTAGFGQEM AGGGGGGFGH GSAPSLLQDM MLNSLPSAPC FSGSFEEAFG GMLGAKREEN  420
SRMEGIARSH GRNEEGGSGG GNDGLTRDFL GLRAFSHRDF INMAGLNSCM SSSSYEQPQQ  480
NKQPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35135196364Zinc finger protein JACKDAW
5b3h_F9e-35135196364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782522.10.0protein indeterminate-domain 7-like
SwissprotQ9LRW71e-125IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2H3XE940.0A0A2H3XE94_PHODC; protein indeterminate-domain 7-like
STRINGXP_008782520.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-107indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]