PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s758801g007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 227aa    MW: 24342.3 Da    PI: 8.2899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s758801g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000856284123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C+k+F++   L  H  +H
  PDK_30s758801g007 62 YECKTCSKCFPSFQALGGHRASH 84
                       99**********99999998887 PP

2zf-C2H214.20.00013140162123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  PDK_30s758801g007 140 HECSICGSEFSSGQALGGHMRRH 162
                        78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-96184No hitNo description
PfamPF139121.4E-116186IPR007087Zinc finger, C2H2
SMARTSM003550.186284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1596289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-9135162No hitNo description
Gene3DG3DSA:3.30.160.608.5E-4138162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.5E-12139163IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764140162IPR007087Zinc finger, C2H2
SMARTSM003550.02140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MANCLILLAQ GRALDTGPKP QIPREEGAAD PANSNGATEK FTSRRFAETT TTTNGKAGFY  60
VYECKTCSKC FPSFQALGGH RASHKKPKLA IPTTGTEDKK AAVVIDGDSL QISMNSFSKS  120
IMAATNANSN STSNSKPKVH ECSICGSEFS SGQALGGHMR RHRPLSIPET SETKKERNVL  180
SLDLNLPAPS DDDRGEFPKS PSDVVAFPFE SKQPLVFSAS ALVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787454.11e-168zinc finger protein ZAT5
TrEMBLA0A2H3XQY61e-167A0A2H3XQY6_PHODC; zinc finger protein ZAT5
STRINGXP_008787454.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-52C2H2 family protein