PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s755201g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 429aa    MW: 46265.4 Da    PI: 8.8681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s755201g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-055274123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  PDK_30s755201g001 52 FVCEICSKGFQRDQNLQLHRRGH 74
                       89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.26E-65174No hitNo description
Gene3DG3DSA:3.30.160.605.0E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0365274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8875274IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035531093123IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.26E-6123148No hitNo description
SMARTSM00355170128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSMEGVSSNQ QSSFAIPNPN PVKKKRSLPG NPDPDAEVIA LSPKSLMATN RFVCEICSKG  60
FQRDQNLQLH RRGHNLPWKL KQRSSKEVRK KVYICPEVAC VHHDPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKKYAVQ SDCKAHTKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA  180
EESERAIAAN TVADDHPPLC SQAAASHDPS TLPNASVQQA QFPHLPSTLP NFSVQQAQFP  240
HLMRTTEASA STGSSQGLQE LSLKGEHQEQ DYFSMRPGIP PWIACQGPGP PLDLSASIYS  300
TRLGPEFQNE NQPPNPPVYP TSAATPHLSA TALLQKAAQM GASMSRPPNS GQMAAHTISA  360
AGFGLGLSSH QEMWGGGDGG GGHVLKDMMM ASMSSAPGLG GGSFGGALGG ILGLKREGNG  420
LPINRERHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-32124185364Zinc finger protein JACKDAW
5b3h_F5e-32124185364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17890KLKQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807175.10.0protein indeterminate-domain 2-like isoform X1
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3Z1V30.0A0A2H3Z1V3_PHODC; protein indeterminate-domain 2-like isoform X1
STRINGXP_008807175.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]