PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s738451g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 454aa    MW: 50230.5 Da    PI: 8.4521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s738451g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.6e-19329362134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  PDK_30s738451g003 329 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 362
                        *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-13323366No hitNo description
SMARTSM004013.6E-21323374IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466327359IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15327363IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.49E-14328378No hitNo description
PfamPF003207.0E-17329362IPR000679Zinc finger, GATA-type
PROSITE patternPS003440329354IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAVANSRSGP AQDDERELGK GSPSAVEEGP SVLKILVWIA GCARVWERID RALATASWIQ  60
QFSTYQVHNL PQIAFDHCPL LISTASDPNH HNMFRFEKLW ISYLQSWDSA RGAWGVLVQR  120
MLCGGFPINW SSPSGGCSDG TERWWAISSG AWTSWEPPLT SFVKVNFNGC MMDGGKRGEG  180
DQDQSHLTPF TLASAPSSCS CPILLNTSQE RGGNNGDHHL LQQEPKEHLF ISKSSDRQVT  240
FPTDCNNNNN TNEESSHDRC VSQEDLHGPS NWMSSKMRFM RKMMNSDHVS KPRRNMQALQ  300
DQVRANQDRS TSSSSSSSSY SPSGIIRVCS DCNTTKTPLW RSGPRGPKSL CNACGIRQRK  360
ARRAMDTAAA SGGIIPREAP SKMRKEKNSD VDRTLPFKKR CKIATTATAT QKNLCFDDVL  420
ISLGNSSAVH RVFPQDERDA ALLLMALSWG IICS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780491.21e-173protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like, partial
TrEMBLA0A2H3X9Q81e-171A0A2H3X9Q8_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-28cytokinin-responsive gata factor 1