PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s735481g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 350aa    MW: 37910.9 Da    PI: 9.5501
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s735481g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.15.1e-41161591131
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....e 74 
                        aag+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai el+ +              +           +
  PDK_30s735481g001  16 AAGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIKAAAAAINELPALdgtfpeapkphhpeE------LmdepD 101
                        6899*************************************************************998877654322220......234433 PP

                TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                        ae++ s +++++++ + +++ +s+ s++s+ s+l+l++ e r kar+rarer ++k  
  PDK_30s735481g001 102 AEAEPSFSQQQQQHLSLSKSGCSSTSETSKGSVLSLSRsEIRVKARERARERAKDKED 159
                        33333333444445667777799999999**9******99************999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-4118158IPR005333Transcription factor, TCP
PROSITE profilePS5136933.351977IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.594140157IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPWHHPSSRI FRVSRAAGGK DRHSKVYTAK GLRDRRVRLS VSTAIQFYDL QDRLGFDQPS  60
KAIEWLIKAA AAAINELPAL DGTFPEAPKP HHPEELMDEP DAEAEPSFSQ QQQQHLSLSK  120
SGCSSTSETS KGSVLSLSRS EIRVKARERA RERAKDKEDR DDGHVAVSHH QNVNPSLNSQ  180
TSFTELLTGS SSNGTAKQMR RLTTVTTTAD YFGQAGLFPQ AQKAQQLPSG FSSQAHFGNS  240
SPMGMDHLMP ASAVAAAAGD YNLNFPISSG LAGFNRGTLQ SNSQSQLPHH HLQRLSSPVD  300
GSNLSFFASA ASAAAATSTE NQFSAGFDGR LQLFYGDGYR HSDLKGKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-252478155Putative transcription factor PCF6
5zkt_B2e-252478155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794502.10.0transcription factor PCF6
RefseqXP_017699124.10.0transcription factor PCF6
RefseqXP_026661783.10.0transcription factor PCF6
TrEMBLA0A2H3ZRV40.0A0A2H3ZRV4_PHODC; transcription factor PCF6
STRINGXP_008794502.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2