PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s730761g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GeBP
Protein Properties Length: 299aa    MW: 33698.6 Da    PI: 10.2146
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s730761g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.29.1e-3721119297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                        lfq+lw++ Dei++LqG+++f++++g+   ++++d+  fy+++k++++++++k+qlveK+rrLKkK++++v+++ sgke++f+++hd+ +fe
  PDK_30s730761g004  21 LFQKLWTDADEIAILQGFLEFTSQRGTthaNYQHDTGPFYDQIKNRLQVDFNKNQLVEKLRRLKKKYRNMVNRMGSGKEFVFKSPHDKATFE 112
                        79************************98867777********************************************************** PP

             DUF573  91 lskkiWg 97 
                        +++kiW 
  PDK_30s730761g004 113 IARKIWS 119
                        ******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-3322119IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLLPGEERKR LAAAHDESRR LFQKLWTDAD EIAILQGFLE FTSQRGTTHA NYQHDTGPFY  60
DQIKNRLQVD FNKNQLVEKL RRLKKKYRNM VNRMGSGKEF VFKSPHDKAT FEIARKIWSP  120
SFKRTRSRDS GNAPNPQLQE SSNLVPVEIA EDVSLSSDHM ISRPRRRSRR RSEGAPEMDV  180
PMPTPVVSIP VLNHTPCSSA PIPNANLIEQ TVKSCLSPLF KELLQYAMGG PCAPVGAGDA  240
GAPLNPLLLN ITGGSGAVQA DEKWRKQQIL ELEVYLKRVE LVREQIKSKL EVLRSMGSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807916.10.0probable transcription factor At3g04930
TrEMBLA0A2H3Z4D80.0A0A2H3Z4D8_PHODC; probable transcription factor At3g04930
STRINGXP_008807916.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-64DNA-binding storekeeper protein-related transcriptional regulator