PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s727901g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 143aa    MW: 16221.1 Da    PI: 7.5963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s727901g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-162364348
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                       y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  PDK_30s727901g001 23 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAALAYDL 64
                       88******.**********865...5******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.2052280IPR001471AP2/ERF domain
SMARTSM003804.2E-242286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-252279IPR001471AP2/ERF domain
CDDcd000184.82E-242379No hitNo description
PfamPF008476.3E-102364IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-182380IPR016177DNA-binding domain
PRINTSPR003674.1E-92334IPR001471AP2/ERF domain
PRINTSPR003674.1E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MADLPQVILH RNRRRRSRAS TEYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAL  60
AYDLSSIAFS GLARARTNFY YPFFAPPSPP PPPPPPPPSP LPEERDDCYF ESGSTEDDDS  120
MTIAAILQSF RHSSALSSSS LLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1422791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11017RNRRRRSR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809528.12e-99ethylene-responsive transcription factor LEP-like
SwissprotQ3E7033e-27ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A2H3Z8544e-98A0A2H3Z854_PHODC; ethylene-responsive transcription factor LEP-like
STRINGXP_008809528.17e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-28ERF family protein