PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s725811g009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 197aa    MW: 21671 Da    PI: 6.0793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s725811g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000244061122
                       EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                       y+C +C++sF r   L  H   
  PDK_30s725811g009 40 YRCAYCDRSFVRFQALGGHHAA 61
                       9**********99888777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-73962IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-53966No hitNo description
PROSITE profilePS5015710.6584067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNCSDHGRRF PYHDFLGGDM QYLHFGARDE PQVSAPPAAY RCAYCDRSFV RFQALGGHHA  60
AHAREMKRQW QQEEKAAASS DCPGSVPRPL NHKGRVAAGG REQGNNLAAC NATPAVPLKA  120
MDWESSISVG SQHSQLVDYM GVQSQRIRVA LWDIKTTDGS SEETLIDPEA NLSEENNTGS  180
REVALGCSEE IDLTLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-07salt tolerance zinc finger