PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s724621g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 360aa    MW: 38382.2 Da    PI: 6.7243
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s724621g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.51.4e-3533119282
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssa 82 
                        +g+kdrhsk++T++g RdRRvRlsa++a++f+d+qd+LG+d++sk+++WLl+ akp+i+el+++       ++ss++ +    s++   
  PDK_30s724621g005  33 TGRKDRHSKVCTAKGTRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLLEHAKPSIDELAELprwhpptTTSSSNPSpP--SNQHDL 119
                        79**************************************************************88777753333322221..111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3233138IPR005333Transcription factor, TCP
PROSITE profilePS5136933.0483593IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSSFNTLKL KSYHMGAAGE VVEVSGGHIV RSTGRKDRHS KVCTAKGTRD RRVRLSAHTA  60
IQFYDVQDRL GYDRPSKAVD WLLEHAKPSI DELAELPRWH PPTTTSSSNP SPPSNQHDLH  120
EQPVPTEPAA DQGAYSGATF LPPLNSDSIA DTIKTFFPMA TTTASSSYQN YPPDLVSRSS  180
NQAQDLRLSL QSLQDPMFHQ NQTPAASSQQ NFLSGNLAFG SASASWPEQN QRVVAWNVAQ  240
TGDGGGGGGD GAYGSNMPPP QAVPLHPALS LSQLFSQRGT LQSSNSPPVR SWMDPIAAAA  300
GHQIHPAGIH SSWPSVTATG FIFSDGGGFS GFHIPAWIQG EEEHGGISSK PPSDSSASNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-204093154Putative transcription factor PCF6
5zkt_B5e-204093154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017698905.10.0transcription factor PCF5-like
SwissprotQ9MAH86e-84TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2H3ZR620.0A0A2H3ZR62_PHODC; transcription factor PCF5-like
STRINGXP_008793159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-59TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]