PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s719751g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 306aa    MW: 34341.6 Da    PI: 7.9923
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s719751g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.88.2e-3046119374
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                        g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ ++ ++    
  PDK_30s719751g001  46 GGKDRHSKVSTIRGLRDRRVRLSVPTAIQVYDLQDKLGVNQPSKVVDWLLNAAQHEIDKLPPLQMPPGNFIqfP 119
                        78*************************************************************88888766321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-2847154IPR005333Transcription factor, TCP
PROSITE profilePS5136928.73647105IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIRNSREEEL LAREEGGTDV DKFPVSSRPW PALKNPRIVR ASRTFGGKDR HSKVSTIRGL  60
RDRRVRLSVP TAIQVYDLQD KLGVNQPSKV VDWLLNAAQH EIDKLPPLQM PPGNFIQFPQ  120
SMAISHKLAP PQAPSFHPTG DGTDFILDDM LDSNTVENAM MVQKSTFWNS DVLLKNKEKE  180
AVKEPSMEKG SMIKGNDVGS GLQNNAMSYP SYHHWDPSNA HISHLGHPSR AEGFHSCQPV  240
SMFASYMNAS TDFNAKQYKH LHMENSASQL LPSNSLRTSL QSGNPSLELL QPNLTFKHHH  300
PQDHQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1852106155Putative transcription factor PCF6
5zkt_B2e-1852106155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810756.10.0transcription factor TCP13-like
RefseqXP_026666202.10.0transcription factor TCP13-like
TrEMBLA0A2H3ZA710.0A0A2H3ZA71_PHODC; transcription factor TCP13-like
STRINGXP_008810756.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-42plastid transcription factor 1