PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s716981g007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 509aa    MW: 55510.6 Da    PI: 9.4425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s716981g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057597123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  PDK_30s716981g007 75 FVCEICNKGFQRDQNLQLHRRGH 97
                       89*******************88 PP

2zf-C2H212.40.00047151173123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  PDK_30s716981g007 151 WKCDKCSKKYAVQSDWKAHAKIC 173
                        58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-77497No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355110116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MMKGLIIQQH QLVEENMSNL TSASGEASVS SNQQSSFASP NPAPVKKKRN LPGNPDPDAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VKKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHA KICGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARVM TANPLADNHP LLFSQPASSH APSPLPHNAL  240
QAQFTHLMRT TAANTNIIGS HGLQEFSLKR EQHLGMRADI PPWLASQGPA SLNQFDLPSS  300
IHSTRLEQQY SHENPAPPPP PFPPHYQGPS TAASSHMSAT ALLQKAAQMG ATMSRPPHHG  360
QMVTHTTNAT VANTTGTGFG LGLTSHQEMA GGGGGGFGHG SAPPLLQDMM MNSLPSPAGF  420
GGPFEEPFGV MLGAKREENT TMESIARRHG RNEEGRSAGA GGGNDGLTRD FLGLRAFSHR  480
DILNMAGFDP CMSSSSYEQS QQNKKPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35147209365Zinc finger protein JACKDAW
5b3h_F2e-35147209365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793218.10.0protein indeterminate-domain 7-like
SwissprotQ9LRW71e-126IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2H3Y4910.0A0A2H3Y491_PHODC; protein indeterminate-domain 7-like
STRINGXP_008793218.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]