PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s699271g015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 168aa    MW: 18660.5 Da    PI: 8.4019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s699271g015genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144163123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  PDK_30s699271g015 41 FECKTCNRQFPSFQALGGHRASH 63
                       89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-839108No hitNo description
PfamPF139122.7E-134065IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274168IPR007087Zinc finger, C2H2
SMARTSM003550.164163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139123.2E-1085110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34986113IPR007087Zinc finger, C2H2
SMARTSM003550.586108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRLRGGDRV ESIDMANVLM LLARGGEEMG HLTRDSPGRV FECKTCNRQF PSFQALGGHR  60
ASHKKPRLMG DGHGQAQSAL AKPRVHECSI CGLEFAIGQA LGGHMRRHRA ATEGFRPGLA  120
EKEPDGKRML WLDLNLPPTE LLDDMECRKV GLSFEFVDKT AMVVDCFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807730.11e-121zinc finger protein ZAT12
SwissprotQ681X41e-28ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2H3Z3091e-120A0A2H3Z309_PHODC; zinc finger protein ZAT12
STRINGXP_008807730.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-35C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]