PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s699271g013
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 164aa    MW: 18489.8 Da    PI: 10.433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s699271g013genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000492951123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C+++F++   L  H  +H
  PDK_30s699271g013 29 YECKTCNRRFPTFQALGGHRTSH 51
                       99**********99998888877 PP

2zf-C2H211.20.00117496123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++Cp Cg  F+    L  H+r+H
  PDK_30s699271g013 74 HECPVCGLEFPIGQALGGHMRRH 96
                       79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.57E-92796No hitNo description
PfamPF139122.0E-122853IPR007087Zinc finger, C2H2
SMARTSM003550.0962951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0972956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
PfamPF139121.9E-107397IPR007087Zinc finger, C2H2
SMARTSM003550.147496IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.97474110IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGDLLLLLSC NGAKAQKMNG IEKPMGRVYE CKTCNRRFPT FQALGGHRTS HLRPRIRRNR  60
VEPPKKERPK QRVHECPVCG LEFPIGQALG GHMRRHKPTE AGEVHAEEKA GRKLWPLPIG  120
RCSLELIAII FAGVIYLDFF CFSCLSKSSS RFELVIAPKP LNIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795823.12e-76zinc finger protein ZAT11-like
TrEMBLA0A2H3YAC25e-75A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like
STRINGXP_008795823.19e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-25C2H2 family protein