PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s697301g008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 370aa    MW: 40458.1 Da    PI: 8.9492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s697301g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07204226123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  PDK_30s697301g008 204 HYCQVCGKGFKRDANLRMHMRAH 226
                        68*******************99 PP

2zf-C2H211.60.00084302325123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        ++C+ C+ k Fs  s+L++H + +
  PDK_30s697301g008 302 FVCNRCNqKQFSVLSDLRTHEKHC 325
                        89******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-6202229No hitNo description
SMARTSM003550.0034204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653204231IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-7204229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-7262266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130264297IPR015880Zinc finger, C2H2-like
SMARTSM0035527302324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNPEGPPFFR NNDPQGFRMN NNPQGFRMYE GIESSIPSSP AGVASGAGTY SQTLLYGISL  60
LRDKVQEVQF LVSLVVSPDP TQRQSVAVAA SGAGAIIQEI IVAASSMIYA LQQVAVGAVS  120
ANTEDGSISH PHGVKASYDC LSKANGVDHI DHVLNDFEGG MIGAVTHRST NTINPDGAKN  180
GHRNKDTCDI IELEAAELLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KTNAALSKPM  240
KGGSAAAAMG HEDGTPFGLP RKKYSCPQEG CRWNKKHPKF QPLKSMICAK NHYKRSHCPK  300
MFVCNRCNQK QFSVLSDLRT HEKHCGDLKW MCSCGTTFSR KDKLMGHVEL FVGHAPATNC  360
FRKQGNLNVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787557.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2H3XRL30.0A0A2H3XRL3_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
STRINGXP_008787557.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein