PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s695281g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 180aa    MW: 20827 Da    PI: 10.7194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s695281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-056487122
                       EEET..TTTEEESSHHHHHHHHHH CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt 22
                       y+C    C++sFs+k +L+ H r 
  PDK_30s695281g002 64 YTCDieGCSMSFSTKQDLTLHKRD 87
                       99*******************985 PP

2zf-C2H216.13.3e-0589111323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        Cp   Cgk F ++ +L++H ++H
  PDK_30s695281g002  89 CPvkGCGKKFFSHKYLVQHRKVH 111
                        9999*****************99 PP

3zf-C2H215.93.6e-05147173123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                        y+C+   Cg++F+  s++ rH r+  H
  PDK_30s695281g002 147 YVCQepGCGQTFRFVSDFSRHKRKtgH 173
                        99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-56086IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.36486IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5386486IPR007087Zinc finger, C2H2
SMARTSM003550.4987111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96787116IPR007087Zinc finger, C2H2
SuperFamilySSF576676.36E-788124No hitNo description
Gene3DG3DSA:3.30.160.605.5E-689115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-9116141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0029117141IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406117146IPR007087Zinc finger, C2H2
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
SuperFamilySSF576676.63E-11127170No hitNo description
Gene3DG3DSA:3.30.160.603.0E-11142170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17147173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616147178IPR007087Zinc finger, C2H2
PROSITE patternPS000280149173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASRKKLNLK DEAEGGPSTR LRKRPSKSIE EVKTKSAGRK QNMKRKAKKA QATNPVTKDE  60
DGEYTCDIEG CSMSFSTKQD LTLHKRDICP VKGCGKKFFS HKYLVQHRKV HMDDRPLECP  120
WKGCSMTFKW AWARTEHIRV HTGDRPYVCQ EPGCGQTFRF VSDFSRHKRK TGHSIRKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-706217721136Lysine-specific demethylase REF6
6a58_A4e-706217721136Lysine-specific demethylase REF6
6a59_A4e-706217721136Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797141.11e-122LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
SwissprotQ5N7122e-72JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2H3YDT21e-121A0A2H3YDT2_PHODC; LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
STRINGXP_008797141.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-71relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]