PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s693301g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24152.7 Da    PI: 9.7458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s693301g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-23953145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       kr en+s rqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk
  PDK_30s693301g004  9 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDIILLMFSPTGK 53
                       789*****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.189153IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-32160IPR002100Transcription factor, MADS-box
CDDcd001204.95E-26256No hitNo description
SuperFamilySSF554553.01E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-201156IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTTCLGE  60
RSNIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS GQTVEELTNH  120
SRLLQAQISE VQKRLSYWSE PEKINSIDHI RAMEESLKHS LNQVQLQKFQ NGIHLPLEIG  180
GEQQSSNISW LHDNEGQPMM LPEDTNLPRQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-13192190MEF2C
5f28_B6e-13192190MEF2C
5f28_C6e-13192190MEF2C
5f28_D6e-13192190MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802579.11e-147agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I03e-83AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A2H3YRH81e-146A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1
STRINGXP_008802579.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-74AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]