PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s686362g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 408aa    MW: 45025.2 Da    PI: 9.5518
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s686362g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-0590112123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C++C+k F r  nL+ H r H
  PDK_30s686362g003  90 FICEICHKGFQRDQNLQLHRRGH 112
                        89*******************88 PP

2zf-C2H212.40.00047166188123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H r +
  PDK_30s686362g003 166 WKCDKCSKKYAVQSDWKAHSRIC 188
                        58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-689112No hitNo description
Gene3DG3DSA:3.30.160.604.5E-589112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05690112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.53390112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355200131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.74E-6161186No hitNo description
SMARTSM00355130166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSNITGDGES FSSGINTGED DEVHQHHEQQ QLHHHLFDGP EAAGANSDVS TSRLPPPPAV  60
KKKRNLPGTP DPAAEVIALS PKTLMATNRF ICEICHKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSTVIQKKV YICPEPACVH HNPSRALGDL TGIKKHYCRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSRICGT REYKCDCGTI FSRRDSFITH RAFCDALAQD NSKLNQPLMA AMASSLQGQA  240
PKLKMVVDTD ATSIGLSEFR LGDMKSPPFS QQPLDMAETP RTIPSSSLQF SESGPMGFDG  300
HRDVNMARMV AGAAHMSATA LLQKAAQMGA TTSGNNIMYR GFTSVMAGPD RVSSTNPYGP  360
MKAHGPFDHL TPPGEQSQLA GINRGGTPNR FYTELRNLLI INKLFRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33162225366Zinc finger protein JACKDAW
5b3h_F3e-33162225366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789952.10.0protein indeterminate-domain 2-like
TrEMBLA0A2H3XX140.0A0A2H3XX14_PHODC; protein indeterminate-domain 2-like
STRINGXP_008789952.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-101C2H2 family protein