PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s680911g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 288aa    MW: 32572.8 Da    PI: 9.986
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s680911g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.6e-20163197135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        CsnC ttkTplWR+gp+g+k+LCnaCG+++rk ++
  PDK_30s680911g001 163 CSNCSTTKTPLWRSGPQGPKSLCNACGIRQRKARQ 197
                        ********************************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-20157209IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-14157196No hitNo description
Gene3DG3DSA:3.30.50.101.7E-16161196IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.059161193IPR000679Zinc finger, GATA-type
CDDcd002024.36E-15162194No hitNo description
PfamPF003201.2E-17163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MIPSNLNQSS LPLKKRNQDQ SHLPTSTPTT NTSYPRPVFL ETSIEDQGAN CREPHGHQQQ  60
QQEKPNEFVL IDGSSDFLQS FSTNNDDKND RRDQYVCDGY HHHEDGHGSV KWMPSKMRWM  120
RKMLAWEQTV TSKPRSSMKN LEEKIQQNRD SIRNFPSGTI RVCSNCSTTK TPLWRSGPQG  180
PKSLCNACGI RQRKARQAAM VVAAAGSGLV AMNTPSKVQK EKRTDRESTI SNKKRCKINT  240
TRTARKKLQI DDIMMSLSDD SAFHRVFPQD EKEAAILLMA LSCGLIHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797761.20.0putative GATA transcription factor 22
TrEMBLA0A2H3YF040.0A0A2H3YF04_PHODC; putative GATA transcription factor 22
STRINGXP_008797761.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-27cytokinin-responsive gata factor 1