PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671761g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 339aa    MW: 38516.9 Da    PI: 6.7902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671761g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002379101323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cgk+F +   L++H   H
  PDK_30s671761g003  79 CSyeGCGKTFIDAGALRKHAHIH 101
                        77779**************9877 PP

2zf-C2H2232e-07106130123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   Cgk Fs   nL+ H+rtH
  PDK_30s671761g003 106 YVCHfeGCGKAFSLDFNLRAHMRTH 130
                        9***********************9 PP

3zf-C2H211.20.0011136160123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp   Cgk +++   Lk+Hi+ H
  PDK_30s671761g003 136 HICPypECGKKYTHECKLKSHIKAH 160
                        679999*****************96 PP

4zf-C2H216.22.9e-05199224123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y Cp   Cgk + + + L+ H+r+ H
  PDK_30s671761g003 199 YACPyeGCGKAYIHEYKLNLHLRReH 224
                        89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-1472102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003177101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76277106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.69E-980130No hitNo description
Gene3DG3DSA:3.30.160.603.6E-13103130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.715106135IPR007087Zinc finger, C2H2
SMARTSM003557.0E-4106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-8116163No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6133160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45136165IPR007087Zinc finger, C2H2
SMARTSM003550.13136160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
SuperFamilySSF576677.11E-6194222No hitNo description
Gene3DG3DSA:3.30.160.603.5E-9194222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0029199224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011199229IPR007087Zinc finger, C2H2
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDLQTNHSMF ERRQPAKDRT PPVRWFKEWV PQDVVATGGK CSLLKWVTED MMKALREKSK  60
EPQAEEPKPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHF EGCGKAFSLD  120
FNLRAHMRTH SLENYHICPY PECGKKYTHE CKLKSHIKAH HEKNSVIDGM KHTPPADKLH  180
NTPKTSAVAY GSASSDRPYA CPYEGCGKAY IHEYKLNLHL RREHPGHNSE ENGKHAPAAD  240
HAMDEASDQD AYVAKGGVGK NNKRSKPHLV QKMPPAKVPN RKGSNLAPAN VSTVKKQWRS  300
KEVYEEDSEE TEEDQDNVEE DGWRYQGVNG DDEETEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-19792208117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930779.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-111YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2H3XC850.0A0A2H3XC85_PHODC; LOW QUALITY PROTEIN: zinc finger transcription factor YY1-like
STRINGXP_008781553.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]