PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s658281g007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 314aa    MW: 35361.3 Da    PI: 6.971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s658281g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-05233255123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  + + ++H +++
  PDK_30s658281g007 233 FMCRKCGKAFAVRGDWRTHEKNC 255
                        89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-5168194No hitNo description
PROSITE profilePS501579.64172199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-6172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-6214253No hitNo description
Gene3DG3DSA:3.30.160.608.6E-6229253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808233253IPR007087Zinc finger, C2H2
SMARTSM0035549233253IPR015880Zinc finger, C2H2-like
SMARTSM00355160259282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MADPYTNFFK GHFNYSPFSS SSSSPPPPPL PTHHFYTNYA NYTTPHLHNR PPSPPLREAL  60
PLLSLSPSKE EDASCSAFEE GEHEKNKGKG DEDNDEEGDV TVALNIGLPS PSAADLISRV  120
SSTSVHEDKE VEDGGGGGGE TIPLEYPTIG RLTKGQYWIP TPSQILIGPT QFSCPVCCKT  180
FNRYNNMQMH MWGHGSQYRK GPENNIDHPR SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK  240
AFAVRGDWRT HEKNCGKLWY CVCGSDFKHK RSLKDHIKAF GHGHATYGID CLEEDDEPSS  300
EIEQDCDHHH HSRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798774.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-112ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2H3YHE50.0A0A2H3YHE5_PHODC; zinc finger protein WIP2-like
STRINGXP_008798774.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]