PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s658281g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 315aa    MW: 36182.6 Da    PI: 4.8726
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s658281g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.38.7e-18289172
           trihelix  1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                       +Wt++ v++Li+++  ++++   ++                +kk++W+ vs  m+e g  +sp+qC++k+++lnkryk+++++ + +t
  PDK_30s658281g004  2 KWTDEVVRLLIRIVAFVGDDCAHEAvdgtagavkrkhgaafQKKGKWKMVSLLMQENGAFVSPQQCEDKFNDLNKRYKRLNDILGPGT 89
                       7**************55555555433444555556667777*****************************************998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-152129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKWTDEVVRL LIRIVAFVGD DCAHEAVDGT AGAVKRKHGA AFQKKGKWKM VSLLMQENGA  60
FVSPQQCEDK FNDLNKRYKR LNDILGPGTS CIVVNDPASL ESMPISQKAK SDVRKILSSK  120
HLFYKEMCAY HSGQKIPDCP DINLQSCSLP HITLSKDGNQ CVDGEGEEDE DEADHDEGDE  180
EEGSEEVGRG GFESFLAEMD AVLQDPTRSP LERREWLRMR ALQLEEERLD IETEALAIER  240
QRFKWQRFSS KKDREIERSR LENERLMLEN ERMRMQARQK ELELHFKRSG DSLESAGFGT  300
EEEQGREQME FGRVH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798770.10.0PREDICTED: uncharacterized protein LOC103713568
TrEMBLW9S6Z61e-106W9S6Z6_9R
STRINGPOPTR_0003s20370.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1947058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-46sequence-specific DNA binding transcription factors