PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550952g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 536aa    MW: 58619.2 Da    PI: 6.4478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550952g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06295316223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C +Cgk F+r  nL+ H+r H
  PDK_30s6550952g001 295 FCVICGKGFKRDANLRMHMRGH 316
                         6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.93E-5292319No hitNo description
PROSITE profilePS5015711.614294321IPR007087Zinc finger, C2H2
SMARTSM003550.015294316IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5295345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
SMARTSM0035591343376IPR015880Zinc finger, C2H2-like
SMARTSM0035522381403IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDPKLRISSE ALAKSSCQMM GDPSRNFNLG QPFIQFNPTN LCYGGGPEQT FPEFTPTPDT  60
ETHGLYQPEP QVNSANQFKP SPNVDTAILD WDPRLILSNL SFLEQKIHQV QAIVQSIINQ  120
EGRLSNRANE MVAQQQLVTA DLTSIIIQLI STAGSLLPSI KNTLVSTNPS ASRLGSVIGA  180
TPSFGLNVSQ QQNAVVPMEV PKASACDKLI DNLNTNSCGK EGSELIKGLH GYGNEDVELI  240
KCVKSCDGEG TELAPLEDHD VKDSDDGVDG ENLPPGSYEL LQLEKEEILA PHTHFCVICG  300
KGFKRDANLR MHMRGHGDEY KTPAALAKPN KELTSEPALI KRYSCPFVGC KRNKEHKKFQ  360
PLKTILCVKN HFKRSHCDKS YTCSRCNTKK FSVIADLKTH EKHCGRDKWL CSCGTTFSRK  420
DKLFGHVALF QGHTPVLAVD DAKVSGTSDQ ARANEVMNGM VGTLEYNFAG SNLDDVQNLN  480
IKGVDSGRGC FSPMNFDACN FGGLDEFLRP ASEVSESPFS FLPFGSSNLI QGSGQN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783403.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XGG30.0A0A2H3XGG3_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008783403.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-161C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]