PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509337g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 201aa    MW: 22748.7 Da    PI: 8.6149
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509337g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1713101186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  +  L++a++e+  +l+rg+l++ +We+v+  +     +++  +s +qCk+k++nl+kryk + ++ +++   ++s++p+f+++e
  PDK_30s65509337g004  13 EWSDTAIGSLLDAYTERYVQLNRGNLRGRDWEDVATLVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 101
                          5********************************97766665599999**************************98.78889********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2111103No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSSSGDYRKD REEWSDTAIG SLLDAYTERY VQLNRGNLRG RDWEDVATLV SDRCDKQKAG  60
KSVEQCKNKI DNLKKRYKVE CQRLSSGGLA VSHWPWFKKM EQIVGSSSSL KALADEDTSG  120
AIGGSAVVTR QMKRWEDMLL ASSKTLSFMF EGGRWKSLFI QQNSHAVAIT VSCWKKETGN  180
LGRSIENDEE KEEIGKIFHI I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777884.12e-93PREDICTED: uncharacterized protein LOC103697738
TrEMBLM0T6P03e-78M0T6P0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13420_0011e-77(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-57Trihelix family protein