PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550914g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 188aa    MW: 20347.1 Da    PI: 4.6001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550914g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000232041122
                        EEETTTTEEESSHHHHHHHHHH CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                        ++Cp C +sF++  +   Hi  
  PDK_30s6550914g002 20 FECPVCARSFPSEADVAAHIDA 41
                        89*****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092123.20E-1858119No hitNo description
SuperFamilySSF1435033.14E-2071153IPR018997PUB domain
PfamPF094098.5E-1972145IPR018997PUB domain
SMARTSM005802.0E-2072139IPR018997PUB domain
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEDVKDKMKG LMKKSSVNSF ECPVCARSFP SEADVAAHID ACLTQDAATA PLGNGVVAEH  60
VSTFLSAVSA DGAVEVVLKL LRNVVREPEN EKFRRIRMGN PKIKEAVGEV KGGVELLECL  120
GFELGEEGGE VWATMHVPSE EQLAVVRDAV SFLESWKSED SNPTSAETLG TVVESSDRQK  180
KIDRQVVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803480.11e-121plant UBX domain-containing protein 2 isoform X1
RefseqXP_008803481.11e-121plant UBX domain-containing protein 2 isoform X2
TrEMBLA0A2H3YT951e-120A0A2H3YT95_PHODC; plant UBX domain-containing protein 2 isoform X2
TrEMBLA0A2H3YTA31e-119A0A2H3YTA3_PHODC; plant UBX domain-containing protein 2 isoform X1
STRINGXP_008803480.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP675633