PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s655061g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 430aa    MW: 47443.6 Da    PI: 8.9381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s655061g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-062648123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cgk F r  nL+ H r H
  PDK_30s655061g002 26 FVCEICGKGFQRDQNLQLHRRGH 48
                       89*******************88 PP

2zf-C2H212.80.00035102124123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H +++
  PDK_30s655061g002 102 WKCEKCSKRYAVQSDWKAHSKVC 124
                        58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-62548No hitNo description
Gene3DG3DSA:3.30.160.601.2E-52648IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0122648IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6142648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-489122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-697122No hitNo description
SMARTSM00355130102122IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MATKRCNPEA EVIALSPKTL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRSTK  60
ERRKRVYVCP EKTCIHHHPS RALGDLTGVK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH  120
SKVCGTREYR CDCGTLFSRR DSFITHRAFC DALAEEAARV SAASNIDRLA SISNANYHFT  180
GGLMRSNMVQ HFPAICKPAM AERQAGDHAL PGLALWMGQR PQNNQTLSTD GSLSAMHQIG  240
PMSISTLYSD PFASCSNAQQ LDGQLSWIYG NKLASSSSVE LTSTSLPTSL KEADLMSIPS  300
QYSTQHHQQS IPASDKSATA LLQKAAQIGA TSCGPSFFGS LEMKCHNTQV QDGSNKYDGL  360
LDPNHPSIAA NMENSLENIA SDITVSNPYS DMHSARHQMA QKDGTRGGET RDFLGVGVQT  420
LCPSSANGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-3798165370Zinc finger protein JACKDAW
5b3h_F8e-3798165370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798275.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-127IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2H3YG310.0A0A2H3YG31_PHODC; zinc finger protein NUTCRACKER-like
STRINGXP_008798275.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-119C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]