PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1204301g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 405aa    MW: 45959.8 Da    PI: 4.4437
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1204301g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-13145229286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W+++ + +L++a  ++  + +r++l+   W +v+kk+++    +rs  qC+++++ l+k+ykk+k ++ +++s+ss +++yf++++
  PDK_30s1204301g001 145 WSEDSTFVLLDAWGDRYVQNGRKSLRSDEWCDVAKKVAQfSRTTRSDAQCRNRLDTLKKKYKKEKVRMAEQASPSS-KWVYFKKMD 229
                         *************************************6626779*************************9876665.9*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-21144231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDATQDDARY LPNLPSPSIC RRPFSSSSSS SSSSPLGSKI SAARKSSFHP PIGRSYADED  60
DEDDRNDTDE AVDEHDDDED ENDGGDRHRK IRGEEEEEEE EAESRGKRRK LDKFALGFEF  120
APRVPRPAIV TLEGKFPAKS SPTDWSEDST FVLLDAWGDR YVQNGRKSLR SDEWCDVAKK  180
VAQFSRTTRS DAQCRNRLDT LKKKYKKEKV RMAEQASPSS KWVYFKKMDE LISSPSPPAA  240
GARQQQPPRL SYGVDAGEYV FASSSIYPNR SNGNDETRDS PGGTGSEEDV DEEDDDDESD  300
GLRPRREKVS MGSSDSSFRM LADSIQKFGE IYEKMESRKR QQMVELERMR KELQRDLEMH  360
KRKVLERAQA EIAKIREEEG EEEEEESEND EDGDEVDVSA DNLSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911328.11e-165PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A067EJ312e-94A0A067EJ31_CITSI; Uncharacterized protein
STRINGPOPTR_0001s18000.15e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-56Trihelix family protein