PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1189271g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family CAMTA
Protein Properties Length: 630aa    MW: 71047.2 Da    PI: 6.6141
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1189271g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-187.11.8e-27192265375
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 
                         ke ++rwlk+ e++ iL+n+e+++lt++++ +p+sgsl+L+nr+++r+fr+DG  w+kk +g+t  E he+LKv
  PDK_30s1189271g001 192 KEaHTRWLKPIEVLFILQNHESFQLTHKPPVEPPSGSLFLFNRRVLRNFRNDGLLWRKKNNGRTLAESHERLKV 265
                         56699********************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143745.044187350IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-30190345IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-23193265IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGHALFQYIW ARATWRLVGI WGRRDLFLQA LRRCSESSLL CQEAARVTCT SYQIWLARNA  60
RTFGKHGMSP RLVVESARMQ VAKLSLIIPV EGTLTAQDIW NFHSALAASH TDPSARVVAT  120
GGSQFFDISI LSAELRAIVT LGLQFDTVPP IRARAAASIS ELFLWTDRDA ARGLGSVHKI  180
EARGFDINKL RKEAHTRWLK PIEVLFILQN HESFQLTHKP PVEPPSGSLF LFNRRVLRNF  240
RNDGLLWRKK NNGRTLAESH ERLKVWLGIL KYWLVTMLVG SKIHVFRGAS IGCWTHGRHA  300
HNVEPGKDTC PIWAYVKIYF NIHCFFCFNE RAHEHIVFVH YREVTEGRCV LEPNFSVSTE  360
SCPTFNQSNS VTDTQVQGFP SQINELNERC QNSRSPVSVE EVSSEFVTGN TERPHLDKMD  420
RSETYNQPLL PDVSQSLRKL EEQLSLDDDD GGGGGDIYSK EKLQPNCNQN EESECLGLLN  480
YETRDLSQET LDSLFDQLKH ETNGHIEEAG LQDGSSTFQI LKTPECSGWS HSLLNSMSKL  540
NSLGADSGLP TLGKDNNIHG LETVHLAENT VYSSSAFSGI WLEQSQLETP LATDSGLPLA  600
QKPWFSICEI SPEWAFSFES AKKVEVTERF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790758.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.16e-21Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains