PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1186921g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 323aa    MW: 35966.5 Da    PI: 9.2521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1186921g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0599121223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +CpdCg+ F  +++L+ H+ + H
  PDK_30s1186921g004  99 PCPDCGEIFMKPETLELHQAVrH 121
                         7******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028098121IPR007087Zinc finger, C2H2
SuperFamilySSF563994.32E-19123322No hitNo description
Gene3DG3DSA:3.90.228.109.4E-10125321IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPSDSKQRES PLQTSSPMAE AKRGSKPVKR SNKSKRQAYM KAEKPPTLRA FRSFFSCKDY  60
RVVEGKHLRR FSGCYECHVA VDPVNGVSRA PSMRATICPC PDCGEIFMKP ETLELHQAVR  120
HAVSELGPDD TSRNIVEIIF QSSWLKKEPP VCKIDRILKV RSTQKTIAEF EIYRDSIKSR  180
ANKVAKKHPR CIADGNELLR FHCTTFACSL GLSGSTNLCQ SAPQCNVCSI IRDGFKMDSL  240
GKIQTMATSG RAHDMARIAS GDAKRAMLVC RVIAGRVKKS QDALEECDSV ANQAGVVYSN  300
LDELFVFDPK AILPCFVVVY SDY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781482.20.0uncharacterized protein LOC103701262
TrEMBLA0A2H3XBV60.0A0A2H3XBV6_PHODC; uncharacterized protein LOC103701262
STRINGXP_008781482.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-94C2H2-like zinc finger protein