PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1145341g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 549aa    MW: 59187.5 Da    PI: 8.7945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1145341g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-055779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  PDK_30s1145341g001 57 FICEVCNKGFQREQNLQLHRRGH 79
                        89*******************88 PP

2zf-C2H213.20.00026133155123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  PDK_30s1145341g001 133 WKCEKCSKRYAVQSDWKAHSKTC 155
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-65679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-75679No hitNo description
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.995779IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035510098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-5121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-7128153No hitNo description
SMARTSM00355130133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MASASSTAPF FEIREEELHN QMKQQQMASI PTSSTAASQT TAPVKKKRNT LMTTNRFICE  60
VCNKGFQREQ NLQLHRRGHN LPWKLRQRST KEVRRRVYVC PEPTCVHHDP SRALGDLTGV  120
KKHFFRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF  180
CDALAQEGTR LPTGLSAIGS HFYGNSSMAL GLSQVNSQIT SLQDQSQPSS NIPQLGGSSA  240
SGSHFDHLIS FPNLSPFHPP QPPPSSAFFL GDCSNHEFNE ETQSHHSYPQ NKTFRGLMQL  300
PDLQSSTIAS SSSAAAATAN LFNLSFFSNS SCTSSINTSN NASNQNNHLL ISDQLRNGNG  360
TTLISGNMSN HMGASISSIF STSMQNESSY PQMSATALLQ KAAQMGSTTS GGSSLLQCFN  420
SSSSSGAKRT NFQASFSGGS SGGGDGLRYQ MENETRLHDL MHSLANGKAG LIGGSDGIAA  480
FGGSCTTGQQ GQESGGFGGF NSGLCNVDEA KFHHNLSAGS VRGSDQLTRD FLGVGDMVRS  540
MGGGVSQGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36129191365Zinc finger protein JACKDAW
5b3h_F6e-36129191365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743081e-117AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696127.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017696128.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_026656993.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2H3ZI740.0A0A2H3ZI74_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRINGXP_008811073.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-100indeterminate(ID)-domain 5