PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1141221g022
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 471aa    MW: 51181.1 Da    PI: 5.3136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1141221g022genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-055372221
                        EETTTTEEESSHHHHHHHHH CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                        +C  Cgk F+++  L  H+r
  PDK_30s1141221g022 53 QCRECGKEFPSWRALFGHMR 72
                        7******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0345275IPR007087Zinc finger, C2H2
SMARTSM003550.00345274IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-65376IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139122.1E-11308333IPR007087Zinc finger, C2H2
SMARTSM003550.033309331IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.14E-8309331No hitNo description
PROSITE profilePS5015710.554309336IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-8373400No hitNo description
SMARTSM003550.48378400IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159378400IPR007087Zinc finger, C2H2
PfamPF139121.8E-9378400IPR007087Zinc finger, C2H2
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MRSHFRMEVA GSSENNGQER AAPSVRGAGY GLREKPKKTW RISDCTSDDG EKQCRECGKE  60
FPSWRALFGH MRCHSERVCP ASEEREEQEG SWSNGGQSEG EAAAVAVPRR RRGSRRMVAV  120
IAASSSSVSE YEREEEDGAI SLMMLSRDAW YCGSGGGGGV AGGIHSFTES SDKNSVVFEG  180
RGIGEGDGDF VPRNGGCWRS GFKRVESEAS DDWFVGDNEF KKPKVCNSDA DEPEDFDEES  240
KKDSSKKNDL NSAVSESGLN PRFDGSEFAI EKQRFDLSDA QFGMDSIGRY RLDASHGVFD  300
KASERRSRFQ CTTCNKTFHS YQALGGHRAS HKRTKGCSGS ENSLEADASV DQAAAEEMDG  360
QGVGIEAANG SPKKAKGHEC LLCGKVFASG QALGGHKRAH LVMNANDRGD AARRQTIVTQ  420
QQPLEMPDLL DLNLPAPVDE DFNSANGSAE MQSWWAGSSL KHEPLVGVIS N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786152.10.0uncharacterized protein LOC103704576
TrEMBLA0A2H3XN050.0A0A2H3XN05_PHODC; uncharacterized protein LOC103704576
STRINGXP_008786152.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-25C2H2-like zinc finger protein