PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1103751g030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 624aa    MW: 66696.4 Da    PI: 8.4141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1103751g030genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.3e-16394440455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A++Y+ksLq
  PDK_30s1103751g030 394 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKSLQ 440
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-20387448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-21388452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-17393444No hitNo description
PfamPF000105.4E-14394440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MHGQSNRPRK SSFPTATAAT SSHTGRAQEK ESRDVVTSKI GQIEAVDPLV NDFPPTAASG  60
DAGVNAQDDD DMVPWINYSI EDSLQNDYCS EHMLEFPGMS LNSMSSHTNT AIADRSNGFT  120
QTAKSSRRNV EQGRTSEELA GASDFSRIKS SQLFQASQEW QSLAQSIKPR ATELSTRGTS  180
STHHGLAGCL LSSRPQKQDR AGSRSSQSSS SIDLMNFSHF SRPAALAKAN LQGLDRLRNN  240
EKASTTTSSN PMEPTVIDSI SGLKSILATP GLASAAPEVE QRSSTRRDGN VNNNNSILPG  300
CINRRSSDVA VAAMPSGRNE TEKGPEAVAA SSSVCSGNGA GAASNGPKHT PKRKTYEGEE  360
SGNQREDHED ESMGLRKSAT VRGTSTKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  420
NKVDKASMLD EAIDYLKSLQ LQVQFLTQIM SMGSGSCMLP LVPPAGIQHM HVPPMAHLSQ  480
MGAGMGMGMR LGYSMGMLDM NGSASCPLLP VPPMHGRQFP FPSIPGTRGL HGMPSSTSLP  540
MFGIPGQGLP ASMPHIPPTC SLSGLPARPN STPGSAGMTN NPSPATDTVP SSTSKDQHQQ  600
SQDLEKIQKP STDDSQMKTS TQVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398403ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026663327.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
TrEMBLA0A3Q0IDA00.0A0A3Q0IDA0_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRINGXP_008800313.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-44phytochrome interacting factor 3