PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1103751g021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GeBP
Protein Properties Length: 333aa    MW: 36544.4 Da    PI: 4.3729
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1103751g021genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.12e-3144141497
              DUF573   4 qrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                          rlw++e ei++LqG+++f+a++g+   +++ d+  fye +k++++++++k+ql+eK+rrLKkK+++ v++ ++ gk+++f+++h++ i++
  PDK_30s1103751g021  44 ARLWTDEEEITILQGFLEFTARRGTtfASHQyDTGPFYEEIKQRLQLEFTKNQLIEKLRRLKKKYRNVVSRmRSMGKDFAFKSSHEKGIYD 134
                         69**********************99877778**************************************97889**************** PP

              DUF573  91 lskkiWg 97 
                         +++ iW 
  PDK_30s1103751g021 135 IARNIWS 141
                         ******6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2945141IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPSVEEEQER AVFDDDVDDD DDDMEGDDSE EDEEEGYEDD DTEARLWTDE EEITILQGFL  60
EFTARRGTTF ASHQYDTGPF YEEIKQRLQL EFTKNQLIEK LRRLKKKYRN VVSRMRSMGK  120
DFAFKSSHEK GIYDIARNIW SANVKRAHDS DDDDLNTPNN SYTIEAISGP DGATTNSDRR  180
ISRSRRRFRR RAAEEATATA AAAAAAANPA TVGVPVTQVP SSSAAAIPGI IEETVKSCLS  240
PLFKELICSA TGGPLGPGLS GEAGILGPGL AAALSPMPFC LGGGPASLPG SGAAVDEKWK  300
KQQILELEVY LNRIELLRDQ IKSTLEELKS SGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800322.11e-165probable transcription factor At3g04930
TrEMBLA0A2H3YLJ51e-163A0A2H3YLJ5_PHODC; probable transcription factor At3g04930
STRINGXP_008800322.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-46DNA-binding storekeeper protein-related transcriptional regulator