PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1082861g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 457aa    MW: 50275 Da    PI: 8.4466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1082861g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-055676323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++Cgk F r  nL+ H r H
  PDK_30s1082861g001 56 CEICGKGFQRDQNLQLHRRGH 76
                        *******************88 PP

2zf-C2H213.50.00021130152123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  PDK_30s1082861g001 130 WKCEKCSKRYAVQSDWKAHSKTC 152
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-75376No hitNo description
SMARTSM003550.0765476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035529095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-7125150No hitNo description
SMARTSM00355130130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAGEAISNVF QLNPCRDPNT PPAVKKKRNL PGTPDPEAEV IALSPKALLA TNRFLCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLRQKSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH  120
FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGILFSRRDS FITHRAFCDA  180
LAEETARVSV VSGINHTMPI VNASYLLPDG LMRSDMLQNF SSNIKTDMSN CKADDKARPK  240
LPLWMDHGIQ SSEPLSSPTS LSDINQIGSM GAGTLYGDLF TSCSNSQHLN SELSWLYGSK  300
LLPSSSAVEL TSTSIPATTM KEVDSSQSLL ASIPSLFSAQ HHHCPAQASN MSATALLQKA  360
AQIGVTSTIP FIGSFEPSKC QDTQIEDASK YDGLLNPNQP SNLENVVSGF TASDPYNLFS  420
ERRCSSVKDD SGGGGETRDF LGVWVHPLCP SSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36126195372Zinc finger protein JACKDAW
5b3h_F5e-36126195372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782073.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-128IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2H3XD690.0A0A2H3XD69_PHODC; zinc finger protein NUTCRACKER-like
STRINGXP_008782073.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]