PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1070141g018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 144aa    MW: 16089.5 Da    PI: 10.2266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1070141g018genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00113353121
                        EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                        ++C+ C+++F++   L  H  
  PDK_30s1070141g018 33 FECKTCSRRFPTYQALGGHRT 53
                        89**********998877765 PP

2zf-C2H217.61.1e-0578100123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg+sFs    L  H+r+H
  PDK_30s1070141g018  78 HECSICGQSFSMGQALGGHMRRH 100
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.873355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5563360IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-733100No hitNo description
PfamPF139124.2E-113357IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM003550.03378100IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-478100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.5E-1178101IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.69978105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
METMKTANLL LSLSRGGTPE KIYRRTKTED GMFECKTCSR RFPTYQALGG HRTGHKRPRL  60
QGLGLDLMQG SRLKPTSHEC SICGQSFSMG QALGGHMRRH KPSSESFPET KAGLEKSMLE  120
FNAIPLENGC SRERSRGVLL ELFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788150.13e-71zinc finger protein ZAT11-like
TrEMBLA0A2H3XSQ18e-70A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like
STRINGXP_008776407.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-25C2H2 family protein