PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1065331g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 291aa    MW: 33679.6 Da    PI: 6.9698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1065331g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011152176123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         + C  C+k ++  +++++H+++  H
  PDK_30s1065331g004 152 FFCDLCNKQYKLAMEFESHLSSydH 176
                         67*****************987666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.9E-1855100IPR000467G-patch domain
PROSITE profilePS5017416.81957102IPR000467G-patch domain
PfamPF015857.3E-165898IPR000467G-patch domain
PROSITE patternPS000280154176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEGKHYSGRQ EAYFQERQID REEDSGKDFH LPIDHRPTEN LDTENLEQAS LDTQLTSSNV  60
GFRLLQKMGW KGKGLGKNEQ GIIEPIKTGI RDSKLGVGKQ EQDDFFTAEE NVQRRRLDIE  120
LEETEELVRK REVLAEREQK IQTEVKEIKK VFFCDLCNKQ YKLAMEFESH LSSYDHNHRK  180
RFKEMKEMHG SSSRDERQKR EQLRQEKEMA RFAQMADAHK QQQQQQQEQL EVSADTGAPK  240
SASKLLAPDQ RQTLKFGFSR PGVSKKTSTG IGKKPKIAVS SIFGNDSDDE S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666105.10.0G patch domain-containing protein 8
TrEMBLA0A2H3ZZG10.0A0A2H3ZZG1_PHODC; G patch domain-containing protein 8
STRINGXP_008810389.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579