PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1057281g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 308aa    MW: 33875.5 Da    PI: 7.8612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1057281g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05134153120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  PDK_30s1057281g001 134 FSCTVCNKTFNRYNNMQMHM 153
                         89*****************9 PP

2zf-C2H211.70.00082222244123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C  Cgk F  + + ++H +++
  PDK_30s1057281g001 222 FGCRRCGKAFAVRGDWRTHEKNC 244
                         56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-5129155No hitNo description
PROSITE profilePS5015710.367134161IPR007087Zinc finger, C2H2
PfamPF128741.1E-4134153No hitNo description
SMARTSM003550.079134156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-6134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM00355220185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.75E-6208242No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5208242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355160222242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MHPPPSHGFF TKGGGGASMS SSQQEEEEHS ILLLTLWPPG QQNNPSSCSS STSTSWSQSK  60
SNKQHPLSHP LNRPDDDDSN VTIALSIGPP SASVSASMST NAAATTTTTT VSNSTPSQYW  120
IPSAAEILVG TTQFSCTVCN KTFNRYNNMQ MHMWGHGSQY RKGSESLRGA TKTTASPSMM  180
RLPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGAR PFGCRRCGKA FAVRGDWRTH  240
EKNCGKLWFC ICGSDFKHKR SLKDHVRSFG GGHAPHIVES MNVDEEEEEE EGEDVDEGGN  300
GENGNMRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780503.10.0zinc finger protein WIP6-like, partial
SwissprotQ9FX681e-109ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2H3X9M60.0A0A2H3X9M6_PHODC; zinc finger protein WIP6-like
STRINGXP_008780503.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-103C2H2-like zinc finger protein