PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1057141g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GeBP
Protein Properties Length: 335aa    MW: 37435.9 Da    PI: 4.5914
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1057141g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.23.8e-3659156397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         fq+lw++ Dei++LqG+++f++++g+   ++++d+  fy+++k++++++++k+qlveK+rrLKkK++++v++++ gke++f+++hd+ +fe
  PDK_30s1057141g002  59 FQKLWTDADEITILQGFLEFTSQRGTthaNYQHDTGPFYDQIKSRLQLEFNKNQLVEKLRRLKKKYRNMVSRIAAGKEFVFKSPHDKATFE 149
                         9************************98867777********************************************************** PP

              DUF573  91 lskkiWg 97 
                         +++kiW 
  PDK_30s1057141g002 150 IASKIWS 156
                         ******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-3359156IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASTAEDDER DAAVYDEEVD DDSDDGVDSD EEYDDDRISP PGEERKPLAV AYDESRRIFQ  60
KLWTDADEIT ILQGFLEFTS QRGTTHANYQ HDTGPFYDQI KSRLQLEFNK NQLVEKLRRL  120
KKKYRNMVSR IAAGKEFVFK SPHDKATFEI ASKIWSPSFK KTRNRDSCNA PNLQLQERSN  180
LVPVQVAEDV ALSSDQMMSM SRRKRSDGEV AREMEVAVAT PVVFVPVVQQ TPCSSAPIPN  240
ASLIEQTVKS CLSPLFKELL QYAIGGPCVP GGAGDGGAAL NPLLLSSAGG SGAVQVDEKW  300
REQQILELEV YLERVELVHE QVKSKLEELR SMGSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696070.10.0probable transcription factor At3g04930
TrEMBLA0A2H3ZI450.0A0A2H3ZI45_PHODC; probable transcription factor At3g04930
STRINGXP_008777017.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-51DNA-binding storekeeper protein-related transcriptional regulator